Minerva Gen*NY*Sis Center for Excellence in Cancer Genomics
University at Albany, State University of New York UAlbany Home UAlbany Site Index UAlbany Search
Tools Home
Cogent Home
Details
Instructions
Contact
 


COGENT - COntrol set GENeraTor for genomics


COGENT allows users to generate randomly sampled sets of actual human genome sequence (as well as random nucleotide sequences), either matched for an input set or based on request parameters.

Enter FASTA input sequences

OR
Upload FASTA sequence file
 
OR
Enter generation parameters:
  Number of sequences to generate    (max = 10,000):

  Smallest sequence length to generate      (min = 10):

  Longest sequence length to generate (max = 5,000):

  GC content to match(0.0 to 100.0):  

Control Set Type to Generate:

utr   probability for picking 3' segments  
           (0.0 implies 1.0 probability of picking from 5' segments)

intronic   non-annotated   full genome

random nucleotide
    Probabilities:
     A: C: G: T: (must add to exactly 1.0)

Match for gc content with +or-  % (min is +or- 2%).

Eliminate genome repeat regions (as designated by RepeatMasker).

Number of control sets to generate:

Email address (required)