Minerva Gen*NY*Sis Center for Excellence in Cancer Genomics
University at Albany, State University of New York UAlbany Home UAlbany Site Index UAlbany Search
Tools Home
LIA Home
Details
Instructions
Contact
 


LIA - Locus Intersection Analysis

LIA allows for any number of sets of genomic loci to be compared for common regions (overlap). Any length of nucleotides can be defined for either minimum allowed overlap, or maximum gap between loci. Locus bridging is also allowed if required.
Upload Files: (".bed", ".gff" or ".gtf" format)
    Negative Set   
Positive FilesNegative Files

Comparison Type:   
Comparison Value:  NTs
Comparison Strand:
Neutral
 Strict Match
 Strict Complement
Permissive Match
 Permissive Complement
Allow Bridging:
Genome Release:
(for viewing in the UCSC Genome Browser)


Results:
Comparison Type: Fixed Overlap
Comparison Value: 1 NTs
Comparison Strand: Neutral
Bridging: false
Unions View as Table View in Excel